STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0608Formate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (289 aa)    
Predicted Functional Partners:
Tter_0612
KEGG: ank:AnaeK_0872 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide- binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 
 0.958
Tter_0611
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_5827 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.912
Tter_0610
PFAM: Polysulphide reductase NrfD; KEGG: eca:ECA1878 nitrite reductase complex component.
 
     0.827
Tter_0860
Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ank:AnaeK_0872 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.806
Tter_0607
Hypothetical protein.
       0.791
Tter_0609
Hypothetical protein.
       0.741
Tter_0861
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_5827 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.719
Tter_1595
KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.709
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.545
Tter_0605
PFAM: protein of unknown function UPF0157; KEGG: lpp:lpp1089 hypothetical protein.
       0.539
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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