STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0621PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfu:Sfum_1980 xylose isomerase domain protein TIM barrel. (281 aa)    
Predicted Functional Partners:
Tter_2273
PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: kpn:KPN_02957 putative hexulose 6 phosphate synthase.
 
    0.753
Tter_0323
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ypk:y0252 hypothetical protein.
  
     0.718
Tter_1907
KEGG: hypothetical protein.
  
     0.705
Tter_1112
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1902 xylose isomerase domain- containing protein.
  
     0.704
Tter_2666
KEGG: atc:AGR_L_146 hypothetical protein.
  
     0.703
Tter_0269
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce8243 fumarylacetoacetase family protein.
  
     0.689
Tter_0620
KEGG: sfu:Sfum_3568 hypothetical protein.
       0.664
Tter_0619
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sus:Acid_7535 alcohol dehydrogenase.
       0.655
Tter_0618
PFAM: NUDIX hydrolase; KEGG: sme:SMc02711 hypothetical protein.
  
    0.637
Tter_2433
KEGG: bsu:BSU30250 hypothetical protein.
  
     0.625
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.