STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0640Hypothetical protein. (183 aa)    
Predicted Functional Partners:
Tter_0641
Two component transcriptional regulator, LuxR family; KEGG: cti:RALTA_B2098 response regulator in two- component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; regulatory protein LuxR; ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; Sigma-70 region 4 type 2; PAS fold-3 domain protein; histidine kinase dimerisation and phosphoacceptor region; Bacterio-opsin activator HTH domain protein; SMART: response regul [...]
       0.534
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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