STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0755TIGRFAM: anti-sigma factor; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor. (77 aa)    
Predicted Functional Partners:
Tter_0756
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: acp:A2cp1_1581 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.773
Tter_0754
Hypothetical protein.
 
     0.748
Tter_0990
Hypothetical protein.
  
     0.696
Tter_0390
KEGG: gur:Gura_1568 hypothetical protein.
  
     0.586
Tter_2415
KEGG: gbm:Gbem_1372 hypothetical protein.
  
     0.536
Tter_2101
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase.
  
     0.504
Tter_0567
PFAM: peptidase C60 sortase A and B; SH3 type 3 domain protein; KEGG: sfr:Sfri_1626 sortase family protein.
  
     0.502
Tter_0757
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.500
Tter_0574
KEGG: psb:Psyr_1541 hypothetical protein.
  
     0.424
Tter_1207
PFAM: ErfK/YbiS/YcfS/YnhG family protein; SMART: Beta-propeller repeat TECPR; KEGG: beta-propeller repeat TECPR.
  
     0.420
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.