STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0838PFAM: metallophosphoesterase; KEGG: scl:sce2733 bis(5'-nucleosyl)- tetraphosphatase (symmetrical). (448 aa)    
Predicted Functional Partners:
Tter_2199
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: scl:sce5872 putative SAM-dependent methyltransferase.
 
 
   0.716
Tter_0233
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dol:Dole_2627 methyltransferase type 11.
 
 
   0.711
Tter_1481
Hypothetical protein; KEGG: sat:SYN_02129 SAM-dependent methyltransferase.
   
   0.673
Tter_2104
PFAM: Methyltransferase type 11; NodS family protein; methyltransferase small; Methyltransferase type 12; KEGG: smd:Smed_5884 methyltransferase type 11.
   
   0.673
Tter_0839
Alpha,alpha-trehalose-phosphate synthase (UDP- forming); PFAM: glycosyl transferase family 20; KEGG: pca:Pcar_3112 trehalose-6-phosphate synthase.
       0.536
Tter_0840
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
       0.536
Tter_0841
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: pca:Pcar_0765 putative ornithine cyclodeaminase.
       0.516
Tter_2728
KEGG: afw:Anae109_3510 hypothetical protein.
  
     0.420
Tter_1100
PFAM: FG-GAP repeat protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: bha:BH1116 hypothetical protein.
  
     0.402
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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