Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tter_0865PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: nmu:Nmul_A2374 pyrrolo-quinoline quinone. (611 aa)    
Predicted Functional Partners:
Tter_0864
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: bcz:BCZK3794 2-hydroxy-3-keto-5- methylthiopentenyl-1-phosphate phosphatase.
       0.549
Tter_0866
SMART: helix-turn-helix domain protein.
       0.497
Tter_1705
KEGG: dol:Dole_0481 putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
   
    0.429
hisS
KEGG: wsu:WS1449 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
    0.409
Tter_0781
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bid:Bind_3255 PpiC-type peptidyl-prolyl cis- trans isomerase.
   
 
 0.406
Tter_1716
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sfu:Sfum_0568 PpiC-type peptidyl-prolyl cis- trans isomerase.
   
 
 0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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