STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0883TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: gbm:Gbem_3806 cobalt ABC transporter, inner membrane subunit CbiQ. (279 aa)    
Predicted Functional Partners:
Tter_0882
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: aeh:Mlg_2033 cobalamin (vitamin B12) biosynthesis CbiM protein.
 0.999
Tter_0884
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1281 cobalt ABC transporter, ATP- binding protein.
 
 0.998
Tter_2689
PFAM: BioY protein; KEGG: mxa:MXAN_2207 BioY family protein.
  
 
 0.763
Tter_0369
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter.
 
 
 0.699
Tter_2110
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter.
  
 
 0.655
Tter_2745
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: jan:Jann_2056 ABC transporter related; Belongs to the ABC transporter superfamily.
  
 
 0.655
Tter_1580
PFAM: ABC-3 protein; KEGG: bcb:BCB4264_A4398 putative cation ABC transporter, permease protein.
 
  
 0.495
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.493
Tter_0475
PFAM: ABC-2 type transporter; KEGG: tcx:Tcr_0985 hypothetical protein.
 
  
  0.458
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.445
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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