STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0971KEGG: lpf:lpl2298 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Tter_0970
PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: sfu:Sfum_1324 hypothetical protein.
       0.773
Tter_0969
TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: rde:RD1_3496 chaperonin CsaA, putative.
       0.701
Tter_0968
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.494
Tter_2681
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bph:Bphy_3856 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.488
Tter_0344
PFAM: Phosphoglycerate mutase; KEGG: smd:Smed_3882 phosphoglycerate mutase.
 
    0.424
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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