STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (390 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: aba:Acid345_0904 xylulokinase.
 
 
 0.939
Tter_2196
PFAM: carbohydrate kinase FGGY; KEGG: rde:RD1_3760 xylulose kinase, putative; Belongs to the FGGY kinase family.
  
 
 0.921
Tter_0164
PFAM: ROK family protein; KEGG: sde:Sde_2639 fructokinase.
    
 0.910
Tter_2056
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: hypothetical protein; K00008 L-iditol 2- dehydrogenase.
     
 0.905
Tter_2272
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bha:BH0189 sorbitol dehydrogenase.
     
 0.905
Tter_2386
KEGG: bsu:BSU04200 hypothetical protein.
     
  0.900
Tter_2534
KEGG: bsu:BSU04200 hypothetical protein.
     
  0.900
Tter_0018
PFAM: ROK family protein; KEGG: mlo:mlr7234 glucose kinase.
    
 0.821
Tter_1197
PFAM: ROK family protein; KEGG: aba:Acid345_3865 glucokinase.
    
 0.821
Tter_2139
PFAM: ROK family protein; KEGG: gox:GOX1182 putative glucokinase.
    
 0.821
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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