STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1020PFAM: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein. (420 aa)    
Predicted Functional Partners:
Tter_1018
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
  
 0.989
Tter_1019
PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E.
  
 0.987
Tter_1021
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dvm:DvMF_2742 Flp pilus assembly protein CpaB.
 
  
 0.987
Tter_1017
Von Willebrand factor type A; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein; TIGRFAM: VWFA-related Acidobacterial domain protein; PFAM: von Willebrand factor type A; type II secretion system protein; SMART: von Willebrand factor type A.
 
  
 0.982
Tter_1023
PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein.
 
  
 0.964
Tter_1024
PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein.
 
     0.872
Tter_0301
KEGG: bxe:Bxe_A3924 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; PAS domain containing protein.
  
 
 0.869
Tter_2194
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
  
 
 0.803
Tter_0442
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein.
  
 
 0.796
Tter_1046
PFAM: protein of unknown function DUF192; KEGG: mxa:MXAN_2045 hypothetical protein.
 
     0.710
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.