STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1024PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein. (145 aa)    
Predicted Functional Partners:
Tter_1021
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dvm:DvMF_2742 Flp pilus assembly protein CpaB.
 
     0.887
Tter_1020
PFAM: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
 
     0.872
Tter_1019
PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E.
 
     0.867
Tter_1018
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
     0.866
Tter_1017
Von Willebrand factor type A; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein; TIGRFAM: VWFA-related Acidobacterial domain protein; PFAM: von Willebrand factor type A; type II secretion system protein; SMART: von Willebrand factor type A.
 
     0.865
Tter_1023
PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein.
 
    
0.797
Tter_1022
Hypothetical protein; KEGG: bph:Bphy_5859 putative transmembrane protein.
       0.768
Tter_1046
PFAM: protein of unknown function DUF192; KEGG: mxa:MXAN_2045 hypothetical protein.
  
     0.741
Tter_1025
Hypothetical protein.
       0.709
Tter_1027
KEGG: reh:H16_A0723 hypothetical membrane protein.
 
     0.595
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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