STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1027KEGG: reh:H16_A0723 hypothetical membrane protein. (483 aa)    
Predicted Functional Partners:
Tter_1026
PFAM: Flp/Fap pilin component; KEGG: pilA; component of type IV pilus; K02651 pilus assembly protein PilA.
       0.773
Tter_1507
PFAM: cytochrome c assembly protein; KEGG: sus:Acid_4232 cytochrome c assembly protein.
  
 
 0.718
Tter_1023
PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein.
 
     0.635
Tter_1024
PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein.
 
     0.595
Tter_1021
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dvm:DvMF_2742 Flp pilus assembly protein CpaB.
 
     0.593
Tter_1018
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
     0.585
Tter_1019
PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E.
 
     0.567
Tter_1017
Von Willebrand factor type A; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein; TIGRFAM: VWFA-related Acidobacterial domain protein; PFAM: von Willebrand factor type A; type II secretion system protein; SMART: von Willebrand factor type A.
 
     0.543
Tter_1025
Hypothetical protein.
       0.536
Tter_1508
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.522
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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