STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1059PFAM: molybdopterin binding domain; KEGG: sus:Acid_1567 competence/damage-inducible protein CinA; Belongs to the CinA family. (372 aa)    
Predicted Functional Partners:
Tter_0054
PFAM: CinA domain protein; KEGG: dps:DP2957 competence-damage inducible protein (CinA); Belongs to the CinA family.
   
 0.956
Tter_1060
PFAM: GCN5-related N-acetyltransferase; KEGG: rpi:Rpic_4740 GCN5-related N- acetyltransferase.
  
    0.777
Tter_1063
KEGG: bha:BH3249 nicotinate phosphoribosyltransferase.
  
  
 0.528
Tter_1062
KEGG: ccv:CCV52592_0502 cytoplasmic membrane protein.
       0.497
Tter_1061
PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_7192 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family.
       0.465
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.440
Tter_0472
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gdi:GDI0629 putative UTP--glucose-1-phosphate uridylyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.409
Tter_0982
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sun:SUN_1448 phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.409
dinG
DNA polymerase III, epsilon subunit; 3'-5' exonuclease.
  
  
 0.409
Tter_1270
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvm:DvMF_0409 CDP-diacylglycerol/glycerol-3- phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.409
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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