STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1060PFAM: GCN5-related N-acetyltransferase; KEGG: rpi:Rpic_4740 GCN5-related N- acetyltransferase. (240 aa)    
Predicted Functional Partners:
Tter_1059
PFAM: molybdopterin binding domain; KEGG: sus:Acid_1567 competence/damage-inducible protein CinA; Belongs to the CinA family.
  
    0.777
Tter_1114
PFAM: 3D domain protein; KEGG: gur:Gura_1160 hypothetical protein.
  
     0.564
Tter_1061
PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_7192 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family.
  
    0.472
Tter_1063
KEGG: bha:BH3249 nicotinate phosphoribosyltransferase.
  
    0.458
Tter_1062
KEGG: ccv:CCV52592_0502 cytoplasmic membrane protein.
       0.455
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.444
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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