STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1077PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein. (426 aa)    
Predicted Functional Partners:
Tter_1078
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like.
 
  
 0.956
Tter_1076
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein.
 
  
 0.901
Tter_2275
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_0187 ATPase.
 
  
 0.653
Tter_1036
Membrane-bound mannosyltransferase-like protein; KEGG: bba:Bd1123 putative membrane-bound mannosyltransferase.
  
     0.638
Tter_0494
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bcr:BCAH187_A2274 methanol dehydrogenase regulatory protein; magnesium chelatase.
 
  
 0.601
Tter_0944
PFAM: glycosyl transferase family 39; KEGG: xop:PXO_04470 dolichyl-phosphate-mannose- protein mannosyltransferase.
  
     0.589
Tter_1657
PFAM: conserved hypothetical protein; KEGG: gme:Gmet_1389 hypothetical protein.
 
     0.560
Tter_1075
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; DNA polymerase X; Helix-hairpin-helix DNA-binding class 1; KEGG: sat:SYN_00286 DNA polymerase IV.
       0.508
Tter_0803
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: bha:BH0078 stage II sporulation protein E.
  
     0.486
Tter_1391
Putative transcriptional regulator; PFAM: AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: xca:xccb100_0556 hypothetical protein.
 
     0.486
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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