STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1090PFAM: membrane protein of unknown function; KEGG: bpt:Bpet4762 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Tter_2377
PFAM: PspC domain protein; KEGG: cps:CPS_4752 phage shock domain-containing protein.
  
    0.678
Tter_2555
PFAM: PspC domain protein; KEGG: hne:HNE_3296 phage shock protein C.
  
    0.678
Tter_1089
PFAM: glycoside hydrolase family 3 domain protein; KEGG: vei:Veis_0942 glycoside hydrolase, family 3 domain protein.
       0.625
Tter_1087
PFAM: UspA domain protein; KEGG: Os03g0750000; hypothetical protein.
       0.449
Tter_1088
PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rpt:Rpal_3877 arsenical pump membrane protein.
       0.449
Tter_0875
KEGG: sus:Acid_5722 hypothetical protein.
  
  
 0.426
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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