STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1104Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: reh:H16_B1876 transcriptional regulator. (232 aa)    
Predicted Functional Partners:
Tter_2510
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bha:BH2137 IclR family transcriptional regulator.
  
  
 0.664
Tter_1103
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1065 hypothetical protein.
 
     0.572
Tter_1106
PFAM: protein of unknown function DUF993; KEGG: atc:AGR_L_3385 hypothetical protein.
  
  
 0.555
Tter_1105
PFAM: oxidoreductase domain protein; KEGG: bja:blr2840 oxidoreductase.
       0.545
Tter_1101
PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU30160 hypothetical protein.
 
     0.535
Tter_1107
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: endonuclease protein.
       0.521
Tter_1102
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07120 transmembrane lipoprotein.
       0.477
Tter_1996
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll6911 transcriptional regulator.
 
  
0.431
Tter_0187
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit.
   
    0.418
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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