Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tter_1113PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_3552 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Tter_1112
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1902 xylose isomerase domain- containing protein.
 
     0.904
menE
O-succinylbenzoate-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
 
    0.901
Tter_1114
PFAM: 3D domain protein; KEGG: gur:Gura_1160 hypothetical protein.
       0.773
Tter_1115
KEGG: acp:A2cp1_4045 hypothetical protein.
       0.502
Tter_2433
KEGG: bsu:BSU30250 hypothetical protein.
  
     0.496
Tter_0323
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ypk:y0252 hypothetical protein.
  
     0.478
Tter_2266
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2048 xylose isomerase domain- containing protein.
  
     0.464
Tter_1998
KEGG: hypothetical protein.
  
     0.402
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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