STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1117TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pna:Pnap_4548 40-residue YVTN family beta- propeller repeat protein. (331 aa)    
Predicted Functional Partners:
Tter_1118
PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: bsu:BSU03950 hypothetical protein.
       0.773
Tter_1119
Hypothetical protein.
       0.586
Tter_1592
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit; KEGG: sus:Acid_0493 hypothetical protein.
  
 
 0.563
Tter_1593
KEGG: sus:Acid_0492 transmembrane prediction.
  
 
 0.563
Tter_1510
KEGG: aba:Acid345_3204 hypothetical protein.
  
 
 0.559
Tter_1120
Hypothetical protein.
       0.499
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
  
     0.474
Tter_0247
PFAM: blue (type 1) copper domain protein; KEGG: aba:Acid345_1788 plastocyanin-like protein.
   
   0.467
Tter_0280
PFAM: blue (type 1) copper domain protein; KEGG: predicted protein.
   
   0.467
Tter_0136
PFAM: WD40 domain protein beta Propeller; KEGG: gme:Gmet_3540 WD-40-like beta propeller repeat-containing protein.
 
 
   0.464
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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