STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1160KEGG: rle:RL3145 putative dehydrogenases. (202 aa)    
Predicted Functional Partners:
Tter_1946
PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to phytanoyl-CoA hydroxylase (Refsum disease).
  
     0.730
Tter_2744
KEGG: hypothetical protein.
  
     0.706
Tter_2355
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bce:BC5091 SnoK-like protein.
  
     0.669
Tter_1143
PFAM: PKD domain containing protein; coagulation factor 5/8 type domain protein; SMART: PKD domain containing protein; Parallel beta- helix repeat; KEGG: hypothetical protein.
  
     0.632
Tter_2530
PFAM: glycoside hydrolase family 39; KEGG: cak:Caul_3132 xylan 1,4-beta-xylosidase.
  
     0.609
Tter_1474
PFAM: oxidoreductase domain protein; aldo/keto reductase; Semialdehyde dehydrogenase NAD - binding; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: mlo:mlr6441 oxidoreductase.
 
    0.599
Tter_2529
PFAM: Carbohydrate-binding family 9; KEGG: bbt:BBta_1040 hypothetical protein.
  
     0.597
Tter_1159
KEGG: bch:Bcen2424_0858 hypothetical protein.
       0.564
Tter_2042
PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3216 extracellular solute-binding protein.
  
     0.537
Tter_2336
PFAM: alpha-L-rhamnosidase; KEGG: sus:Acid_3742 alpha-L-rhamnosidase.
  
     0.507
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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