STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1163PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: afw:Anae109_1442 radical SAM domain- containing protein. (472 aa)    
Predicted Functional Partners:
Tter_1162
Fe(II) trafficking protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.
 
     0.836
Tter_1164
PFAM: protein of unknown function DUF201; phosphoribosylglycinamide synthetase; KEGG: ade:Adeh_2440 biotin carboxylase-like.
 
     0.793
Tter_1161
PFAM: formyl transferase domain protein; KEGG: erg:ERGA_CDS_02000 methionyl-tRNA formyltransferase.
 
     0.616
Tter_1363
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.487
Tter_2153
KEGG: smd:Smed_6282 hypothetical protein.
  
  
 0.447
Tter_2260
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
   
 0.444
Tter_0678
PFAM: glycosyl transferase family 9; KEGG: glo:Glov_0772 lipopolysaccharide heptosyltransferase II.
  
     0.427
Tter_2027
KEGG: ank:AnaeK_0999 hypothetical protein.
  
     0.427
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.