STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1179PFAM: O-antigen polymerase; KEGG: aba:Acid345_2587 O-antigen polymerase. (446 aa)    
Predicted Functional Partners:
Tter_1842
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: shn:Shewana3_2005 WecB/TagA/CpsF family glycosyl transferase.
  
  
 0.839
Tter_2801
PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_2352 glycosyl transferase family protein.
 
  
 0.839
Tter_1181
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.807
Tter_2800
PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_2352 glycosyl transferase family protein.
 
   
 0.790
Tter_1178
KEGG: mpo:Mpop_5106 hypothetical protein.
  
  
 0.781
Tter_1180
PFAM: lipopolysaccharide biosynthesis protein; KEGG: nar:Saro_3224 protein-tyrosine kinase.
  
    0.758
Tter_2813
PFAM: biotin/lipoyl attachment domain-containing protein; transferase hexapeptide repeat containing protein; KEGG: gur:Gura_1700 serine acetyltransferase-like protein.
  
  
 0.597
Tter_1182
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: oan:Oant_4417 NAD-dependent epimerase/dehydratase.
     
 0.473
Tter_2869
PFAM: protein of unknown function DUF839; KEGG: mmr:Mmar10_1515 hypothetical protein.
  
     0.455
Tter_1173
PFAM: glycosyl transferase group 1; KEGG: mpt:Mpe_A1051 putative transferase.
 
  
 0.430
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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