STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1196PFAM: Rieske [2Fe-2S] domain protein; KEGG: scl:sce7049 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Tter_1295
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_5300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.855
Tter_0858
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gme:Gmet_1754 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.833
Tter_2411
PFAM: YHS domain protein; SMART: TRASH domain protein; KEGG: sfu:Sfum_2247 efflux transporter, RND family, MFP subunit.
   
   0.579
Tter_1194
KEGG: sfu:Sfum_1006 hypothetical protein.
       0.547
Tter_1195
PFAM: MMPL domain protein; KEGG: bcr:BCAH187_A1444 putative transporter.
       0.547
Tter_0581
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sat:SYN_02272 uroporphyrin-III C- methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.503
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
  
  
 0.423
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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