Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tter_1200KEGG: ypm:YP_2290 hypothetical protein. (348 aa)    
Predicted Functional Partners:
Tter_2195
PFAM: glycoside hydrolase family 5; KEGG: aba:Acid345_1689 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.827
Tter_0204
PFAM: glycosidase PH1107-related; KEGG: nha:Nham_4368 glycosidase, PH1107-related.
 
     0.779
Tter_0859
PFAM: glycosidase PH1107-related; KEGG: bbt:BBta_p0126 hypothetical protein.
 
     0.778
Tter_1199
PFAM: alpha/beta hydrolase fold; KEGG: prw:PsycPRwf_0993 alpha/beta hydrolase fold.
       0.773
Tter_1201
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: aba:Acid345_2371 ABC transporter, ATPase subunit.
       0.556
Tter_1197
PFAM: ROK family protein; KEGG: aba:Acid345_3865 glucokinase.
       0.518
Tter_1198
Hypothetical protein.
       0.518
Tter_1907
KEGG: hypothetical protein.
  
 
 0.473
Tter_2666
KEGG: atc:AGR_L_146 hypothetical protein.
  
 
 0.466
Tter_2664
KEGG: mno:Mnod_5589 hypothetical protein.
  
 
   0.403
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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