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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1207PFAM: ErfK/YbiS/YcfS/YnhG family protein; SMART: Beta-propeller repeat TECPR; KEGG: beta-propeller repeat TECPR. (616 aa)    
Predicted Functional Partners:
Tter_1208
PFAM: phospholipase/Carboxylesterase; KEGG: pfo:Pfl01_2066 phospholipase/carboxylesterase.
       0.511
Tter_1209
PFAM: Integral membrane protein TerC; KEGG: sfu:Sfum_3512 integral membrane protein TerC.
       0.498
Tter_0990
Hypothetical protein.
  
  
 0.466
Tter_2412
KEGG: scl:sce8190 hypothetical protein.
  
     0.453
Tter_1099
KEGG: sus:Acid_1474 hypothetical protein.
  
     0.436
Tter_0755
TIGRFAM: anti-sigma factor; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor.
  
     0.420
Tter_2681
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bph:Bphy_3856 glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.417
Tter_0405
PFAM: GCN5-related N-acetyltransferase; KEGG: rle:pRL110512 hypothetical protein.
  
    0.403
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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