STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1224Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (914 aa)    
Predicted Functional Partners:
Tter_1189
PFAM: Citrate synthase; KEGG: bsu:BSU29140 methylcitrate synthase; Belongs to the citrate synthase family.
 
 0.997
Tter_0788
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mca:MCA3071 isocitrate dehydrogenase, NAD- dependent, putative.
 
 0.946
Tter_0340
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.875
Tter_0005
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bha:BH3101 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
 0.863
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.858
rpmB
PFAM: ribosomal protein L28; KEGG: ribosomal protein L28; K02902 large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.819
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.817
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: nis:NIS_0245 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.815
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dal:Dalk_3305 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.815
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: ribosomal protein L27; K02899 large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.812
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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