STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1237PFAM: PEGA domain protein; KEGG: bsu:BSU06570 hypothetical protein. (613 aa)    
Predicted Functional Partners:
Tter_1425
PFAM: VanW family protein; KEGG: bca:BCE_0672 hypothetical protein.
  
     0.553
Tter_0797
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3893 stage III sporulation protein E; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.552
Tter_0345
PFAM: VanW family protein; KEGG: bca:BCE_0672 hypothetical protein.
  
     0.535
Tter_1238
PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: sus:Acid_1436 tagatose-bisphosphate aldolase.
       0.504
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.488
Tter_2404
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: gme:Gmet_0751 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
 
 0.472
Tter_1235
PFAM: protein of unknown function UPF0118; KEGG: bha:BH2921 hypothetical protein.
 
     0.469
Tter_1236
PFAM: protein of unknown function DUF1037; KEGG: lch:Lcho_3205 hypothetical protein.
       0.458
Tter_0953
Hypothetical protein.
    
 
 0.452
Tter_1268
Carboxyl-terminal protease; KEGG: bsu:BSU19590 carboxy-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
  
   0.440
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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