STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1257Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: hypothetical protein; K03969 phage shock protein A. (238 aa)    
Predicted Functional Partners:
Tter_2194
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
    
 
 0.974
Tter_2377
PFAM: PspC domain protein; KEGG: cps:CPS_4752 phage shock domain-containing protein.
  
 
 0.909
Tter_2555
PFAM: PspC domain protein; KEGG: hne:HNE_3296 phage shock protein C.
  
 
 0.909
Tter_0301
KEGG: bxe:Bxe_A3924 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; PAS domain containing protein.
  
 
 0.712
Tter_1258
Hypothetical protein; KEGG: mno:Mnod_2311 flagellar hook-associated protein FlgK.
       0.689
Tter_1256
Hypothetical protein.
       0.668
Tter_1259
KEGG: swi:Swit_4521 membrane-like protein.
       0.616
Tter_2366
PFAM: band 7 protein; SMART: band 7 protein; KEGG: aba:Acid345_1402 flotillin.
  
  
 0.611
Tter_0875
KEGG: sus:Acid_5722 hypothetical protein.
  
  
 0.496
Tter_0798
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: bsu:BSU35500 two-component sensor histidine kinase.
  
  
 0.493
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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