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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1259KEGG: swi:Swit_4521 membrane-like protein. (649 aa)    
Predicted Functional Partners:
Tter_1258
Hypothetical protein; KEGG: mno:Mnod_2311 flagellar hook-associated protein FlgK.
       0.689
Tter_1257
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: hypothetical protein; K03969 phage shock protein A.
       0.616
Tter_1256
Hypothetical protein.
       0.537
Tter_0990
Hypothetical protein.
 
    0.456
Tter_2870
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.450
Tter_1260
KEGG: hypothetical protein.
       0.430
Tter_0918
KEGG: sus:Acid_0799 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
   
    0.408
Tter_1261
Hypothetical protein.
       0.403
Tter_0291
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; KEGG: pau:PA14_57940 RNA polymerase factor sigma-54.
   
    0.400
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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