Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tter_1276PFAM: GCN5-related N-acetyltransferase; KEGG: glo:Glov_2306 ribosomal-protein-alanine acetyltransferase. (270 aa)    
Predicted Functional Partners:
Tter_1049
PFAM: integrase domain protein SAM domain protein; KEGG: noc:Noc_0687 phage integrase; Belongs to the 'phage' integrase family.
  
   
 0.580
Tter_1277
PFAM: protein of unknown function DUF951; KEGG: bha:BH4052 hypothetical protein.
       0.512
Tter_1278
PFAM: major facilitator superfamily MFS_1; KEGG: aba:Acid345_2643 major facilitator superfamily (MFS) transporter.
       0.512
Tter_0944
PFAM: glycosyl transferase family 39; KEGG: xop:PXO_04470 dolichyl-phosphate-mannose- protein mannosyltransferase.
  
    0.400
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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