STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1292PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: slo:Shew_2209 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family. (913 aa)    
Predicted Functional Partners:
Tter_2404
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: gme:Gmet_0751 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
  
 
0.930
Tter_0669
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: shw:Sputw3181_3341 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.644
Tter_1291
PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0001624 putative sugar ABC transporter, substrate-binding protein.
       0.506
Tter_1289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL1659 putative transmembrane component of ABC transporter.
       0.499
Tter_1290
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_1219 binding-protein-dependent transport systems inner membrane component.
       0.499
pyrF
TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: rpi:Rpic_3018 orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.475
Tter_0130
KEGG: bsu:BSU06570 hypothetical protein.
 
 
 0.425
Tter_2648
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase; KEGG: mgm:Mmc1_2016 helicase domain protein.
   
 
 0.416
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.411
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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