STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1300PFAM: UbiA prenyltransferase; KEGG: dol:Dole_2097 UbiA prenyltransferase. (294 aa)    
Predicted Functional Partners:
Tter_1299
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC0672 hypothetical protein.
       0.697
Tter_0583
KEGG: aba:Acid345_2313 hypothetical protein.
  
     0.683
Tter_2178
KEGG: cvi:CV_4323 hypothetical protein; Belongs to the ComB family.
  
     0.615
Tter_2027
KEGG: ank:AnaeK_0999 hypothetical protein.
  
     0.587
Tter_1913
PFAM: peptidase M28; KEGG: bra:BRADO0660 putative aminopeptidase; putative exported protein.
  
     0.575
Tter_1298
PFAM: beta-lactamase; KEGG: bcr:BCAH187_A2346 hypothetical protein.
  
    0.502
Tter_0756
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: acp:A2cp1_1581 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.500
Tter_1297
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ses:SARI_01289 hypothetical protein.
       0.485
Tter_2028
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; cobalamin B12- binding domain protein; SMART: regulatory protein MerR; KEGG: mxa:MXAN_0904 B12 binding domain/transcriptional regulator, MerR family.
 
  
 0.483
Tter_2620
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.467
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.