STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1307PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bha:BH3818 hypothetical protein. (446 aa)    
Predicted Functional Partners:
Tter_1306
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_3502 methyltransferase type 11.
       0.665
Tter_1305
Hypothetical protein.
       0.658
Tter_1308
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: scl:sce4644 rhodanese-like domain-containing protein.
       0.541
Tter_1309
PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: gbm:Gbem_1979 Mov34/MPN/PAD-1 family protein.
       0.500
Tter_1310
PFAM: carbonic anhydrase; KEGG: scl:sce1313 putative carbonate hydratase.
       0.463
Tter_1304
PFAM: Nucleotidyl transferase; KEGG: pca:Pcar_0276 glucose-1-phosphate thymidylyltransferase.
       0.437
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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