STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1310PFAM: carbonic anhydrase; KEGG: scl:sce1313 putative carbonate hydratase. (165 aa)    
Predicted Functional Partners:
Tter_1309
PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: gbm:Gbem_1979 Mov34/MPN/PAD-1 family protein.
       0.709
Tter_1308
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: scl:sce4644 rhodanese-like domain-containing protein.
       0.652
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.620
Tter_1311
PFAM: selenium-binding protein; KEGG: rde:RD1_2378 selenium binding protein.
       0.579
Tter_2588
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: similar to beta-mannosidase; K01192 beta- mannosidase.
  
     0.514
Tter_1307
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bha:BH3818 hypothetical protein.
       0.463
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
  
  
 0.454
Tter_1314
TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sus:Acid_0758 cysteine synthase.
  
  
 0.442
Tter_1312
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dac:Daci_5151 rhodanese domain-containing protein.
  
    0.440
Tter_1305
Hypothetical protein.
  
    0.413
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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