STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1316Catalase; PFAM: manganese containing catalase; KEGG: bha:BH1069 Mn catalase. (294 aa)    
Predicted Functional Partners:
Tter_0340
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.735
Tter_2282
PFAM: protein of unknown function DUF892; KEGG: sus:Acid_5777 hypothetical protein.
 
    0.647
Tter_1502
PFAM: protein of unknown function DUF624; KEGG: bsu:BSU30090 hypothetical protein.
  
     0.492
Tter_1315
PFAM: ferric-uptake regulator; transcriptional regulator TrmB; KEGG: dvm:DvMF_1364 ferric uptake regulator, Fur family; Belongs to the Fur family.
     
 0.453
Tter_1781
PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: sun:SUN_1445 hypothetical protein.
  
     0.430
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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