STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1329PFAM: Cupin 2 conserved barrel domain protein. (123 aa)    
Predicted Functional Partners:
Tter_1328
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sus:Acid_2141 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.705
Tter_1330
PFAM: Luciferase-like monooxygenase; KEGG: bam:Bamb_4322 luciferase family protein.
       0.559
Tter_1327
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: acp:A2cp1_1008 major facilitator superfamily MFS_1.
     
 0.481
Tter_1184
KEGG: dps:DP2255 hypothetical protein.
  
    0.433
Tter_2142
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bce:BC4053 GntR family transcriptional regulator.
  
    0.432
Tter_2284
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: mlo:mll1745 transcription regulator.
  
    0.432
Tter_2575
Phophonate C-P lyase system transcriptional regulator PhnF, GntR family; KEGG: bce:BC4053 GntR family transcriptional regulator; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
    0.432
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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