STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1334PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit. (396 aa)    
Predicted Functional Partners:
Tter_1333
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: bcy:Bcer98_1146 ferredoxin--nitrite reductase.
       0.791
Tter_1335
Hypothetical protein.
       0.779
Tter_1595
KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.738
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
  
 
 0.729
Tter_0612
KEGG: ank:AnaeK_0872 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide- binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.709
Tter_2256
PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU1620 iron-sulfur cluster binding protein, putative.
  
 
 0.642
Tter_2677
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: pau:PA14_15570 hypothetical protein.
  
     0.597
Tter_0221
PFAM: polysaccharide biosynthesis protein; KEGG: bat:BAS4308 stage V sporulation protein B.
 
     0.525
Tter_1862
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: cps:CPS_4045 putative F420-dependent oxidoreductase.
 
     0.500
fbiD
Protein of unknown function DUF121; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
  
     0.441
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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