STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1343Aminotransferase class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (389 aa)    
Predicted Functional Partners:
Tter_0869
PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0755 NifU domain-containing protein.
 
 0.978
Tter_1313
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; thiamineS protein; KEGG: sus:Acid_0755 UBA/ThiF-type NAD/FAD binding protein.
   
 0.974
Tter_1695
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein.
 
 0.953
Tter_0305
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: hch:HCH_04507 rhodanese-related sulfurtransferase.
  
 0.915
Tter_1312
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dac:Daci_5151 rhodanese domain-containing protein.
  
 0.915
Tter_1551
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce7329 cysteine desulfurase.
  
  
 
0.909
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.885
Tter_2152
PFAM: Domain of unknown function DUF1858; KEGG: sme:SMa1256 hypothetical protein.
   
 
 0.816
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.717
Tter_1413
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: eba:ebB30 iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.
 
  
 0.702
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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