STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1384Conserved hypothetical protein. (388 aa)    
Predicted Functional Partners:
Tter_1383
KEGG: hypothetical protein LOC690110.
       0.773
Tter_1385
KEGG: sat:SYN_02191 selenocysteine-specific protein translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein.
       0.738
Tter_1387
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
  
 0.637
Tter_0994
Hypothetical protein.
  
     0.632
Tter_0009
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; SH3 domain protein; KEGG: bcb:BCB4264_A1909 peptidase, M23/M37 family.
  
     0.573
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.542
Tter_1458
PFAM: regulatory protein AsnC/Lrp family; KEGG: mmw:Mmwyl1_0222 AsnC family transcriptional regulator.
  
     0.512
Tter_1388
Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: bha:BH1994 hypothetical protein.
 
     0.506
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.497
Tter_2399
PFAM: ABC-2 type transporter; KEGG: aba:Acid345_0285 ABC multidrug efflux pump, inner membrane subunit.
  
     0.484
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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