STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1420PFAM: transport system permease protein; KEGG: pde:Pden_4830 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (361 aa)    
Predicted Functional Partners:
Tter_1419
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1587 iron(III) dicitrate transport system (permease).
 
 0.993
Tter_1421
PFAM: periplasmic binding protein; KEGG: bsu:BSU33180 hypothetical protein.
 
 
 0.986
Tter_2015
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU32940 hypothetical protein.
 
 0.975
Tter_2011
PFAM: periplasmic binding protein; KEGG: bcr:BCAH187_A0743 iron compound ABC transporter, iron compound-binding protein.
 
 
 0.900
Tter_0241
PFAM: periplasmic binding protein; KEGG: pzu:PHZ_c1916 probable periplasmic substrate- binding protein.
 
 
 0.821
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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