STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1443PFAM: protein of unknown function DUF990; KEGG: mxa:MXAN_6001 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Tter_1442
PFAM: protein of unknown function DUF990; KEGG: scl:sce6954 putative ABC-2 type transport system permease protein.
 
  
 0.965
Tter_1441
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ank:AnaeK_0432 ABC transporter-related protein.
 
  
 0.964
Tter_1440
PFAM: OsmC family protein; KEGG: sfu:Sfum_4048 OsmC family protein.
       0.523
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.