STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1475PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mes:Meso_3687 alpha amylase, catalytic region. (553 aa)    
Predicted Functional Partners:
Tter_0329
PFAM: aminoglycoside phosphotransferase; KEGG: mch:Mchl_2940 trehalose synthase.
 0.996
Tter_0244
KEGG: gur:Gura_3250 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
 
 
 0.932
Tter_0827
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: scl:sce3064 Alpha amylase, catalytic region.
  
  
 
0.928
Tter_2448
PFAM: glycoside hydrolase clan GH-D; KEGG: sus:Acid_0933 glycoside hydrolase, clan GH-D.
 
 
 0.920
Tter_2514
PFAM: glycoside hydrolase clan GH-D; KEGG: sus:Acid_7394 glycoside hydrolase, clan GH-D.
 
 
 0.920
Tter_2515
PFAM: glycoside hydrolase clan GH-D; KEGG: sus:Acid_7394 glycoside hydrolase, clan GH-D.
 
 
 0.920
Tter_1939
Beta-galactosidase; KEGG: mxa:MXAN_6555 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
 
 
 0.919
Tter_2324
PFAM: glycoside hydrolase clan GH-D; KEGG: alpha-galactosidase.
 
 
 0.919
Tter_2439
PFAM: glycoside hydrolase clan GH-D; KEGG: sus:Acid_0933 glycoside hydrolase, clan GH-D.
 
 
 0.919
Tter_0330
KEGG: mxa:MXAN_3684 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
  
 
0.918
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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