STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1479Endo-1,4-beta-xylanase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10. (371 aa)    
Predicted Functional Partners:
Tter_2201
Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: glycoside hydrolase family 43; KEGG: scl:sce1485 putative Beta-xylosidase.
 
   
 0.797
Tter_1100
PFAM: FG-GAP repeat protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: bha:BH1116 hypothetical protein.
  
     0.729
Tter_2698
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.717
Tter_0425
PFAM: putative esterase; KEGG: mxa:MXAN_4392 putative esterase.
  
 
 0.600
Tter_2195
PFAM: glycoside hydrolase family 5; KEGG: aba:Acid345_1689 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.570
Tter_2206
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase.
 
   
 0.531
Tter_1480
KEGG: bce:BC1700 glycosyl hydrolase.
       0.526
Tter_2588
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: similar to beta-mannosidase; K01192 beta- mannosidase.
  
   
 0.524
Tter_1200
KEGG: ypm:YP_2290 hypothetical protein.
    
   0.483
Tter_1680
PFAM: protein of unknown function DUF255; KEGG: dal:Dalk_2829 protein of unknown function DUF255.
    
   0.483
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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