STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1508Cytochrome C biogenesis protein; Possible subunit of a heme lyase. (174 aa)    
Predicted Functional Partners:
Tter_1507
PFAM: cytochrome c assembly protein; KEGG: sus:Acid_4232 cytochrome c assembly protein.
 
  
 0.982
Tter_1506
PFAM: CcmE/CycJ protein; KEGG: dds:Ddes_2369 cytochrome c-type biogenesis protein CcmE.
 
  
 0.959
Tter_0235
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
  
 0.826
Tter_0237
PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: mgm:Mmc1_3499 cytochrome c-type biogenesis protein CcmB.
 
   
 0.823
Tter_0238
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_2302 cytochrome c assembly protein.
 
   
 0.817
Tter_1510
KEGG: aba:Acid345_3204 hypothetical protein.
     
 0.809
Tter_1509
KEGG: hypothetical protein.
       0.773
Tter_0083
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_3; Sel1 domain protein repeat- containing protein; SMART: Tetratricopeptide domain protein; Sel1 domain protein repeat-containing protein; KEGG: SLEI family protein.
  
  
 0.605
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
   
 0.534
Tter_1027
KEGG: reh:H16_A0723 hypothetical membrane protein.
  
  
 0.522
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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