STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1509KEGG: hypothetical protein. (464 aa)    
Predicted Functional Partners:
Tter_1506
PFAM: CcmE/CycJ protein; KEGG: dds:Ddes_2369 cytochrome c-type biogenesis protein CcmE.
       0.773
Tter_1507
PFAM: cytochrome c assembly protein; KEGG: sus:Acid_4232 cytochrome c assembly protein.
       0.773
Tter_1508
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
       0.773
Tter_1510
KEGG: aba:Acid345_3204 hypothetical protein.
       0.773
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.