STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1525PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ccs:CCNA_01359 myo-inositol catabolism protein IolB. (278 aa)    
Predicted Functional Partners:
Tter_1524
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_1483 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
 
 
 0.999
Tter_1521
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: lpf:lpl1615 hypothetical protein.
  
 0.978
Tter_1523
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcz:pE33L466_0299 myo-inositol 2- dehydrogenase.
 
  
 0.966
Tter_1526
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: sus:Acid_1485 inositol 2-dehydrogenase.
 
  
 0.954
Tter_0273
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1947 xylose isomerase domain- containing protein.
  
 0.876
Tter_2690
KEGG: sugar ABC transporter.
 
  
 0.799
Tter_2692
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oan:Oant_1833 ABC transporter related.
 
  
 0.771
Tter_2313
PFAM: oxidoreductase domain protein; Xylose isomerase domain protein TIM barrel; KEGG: xau:Xaut_2339 oxidoreductase domain- containing protein.
  
  
 0.759
Tter_1522
KEGG: cco:CCC13826_0628 hypothetical protein.
       0.737
Tter_2691
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mlo:mlr2441 permease protein of sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    0.731
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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