STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1573PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_2233 major facilitator family transporter. (410 aa)    
Predicted Functional Partners:
Tter_1572
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: bha:BH0708 hypothetical protein.
 
    0.707
Tter_1571
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: atc:AGR_L_2949 hypothetical protein.
  
    0.504
Tter_0891
PFAM: protein of unknown function DUF1006; KEGG: cvi:CV_0245 hypothetical protein.
  
     0.436
Tter_1570
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sus:Acid_7076 NAD-dependent epimerase/dehydratase.
  
    0.421
Tter_1106
PFAM: protein of unknown function DUF993; KEGG: atc:AGR_L_3385 hypothetical protein.
  
  
 0.414
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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