STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1577Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bba:Bd2444 ferric uptake regulation protein; Belongs to the Fur family. (147 aa)    
Predicted Functional Partners:
Tter_1579
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_1834 ABC transporter related.
  
  
 0.856
Tter_1580
PFAM: ABC-3 protein; KEGG: bcb:BCB4264_A4398 putative cation ABC transporter, permease protein.
 
  
 0.847
Tter_1578
PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.822
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.559
Tter_1576
PFAM: Abortive infection protein; KEGG: bcy:Bcer98_0164 abortive infection protein.
     
 0.542
Tter_1582
PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
  
  
 0.535
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.495
Tter_1581
Hypothetical protein.
       0.478
Tter_0985
PFAM: CoA-binding domain protein; KEGG: sus:Acid_6492 CoA-binding domain-containing protein.
  
    0.453
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.426
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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