STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1578PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; Belongs to the bacterial solute-binding protein 9 family. (314 aa)    
Predicted Functional Partners:
Tter_1579
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_1834 ABC transporter related.
 
 
 0.999
Tter_1580
PFAM: ABC-3 protein; KEGG: bcb:BCB4264_A4398 putative cation ABC transporter, permease protein.
 
 0.998
Tter_1577
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bba:Bd2444 ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.824
Tter_2471
PFAM: cobalamin synthesis protein P47K; KEGG: bca:BCE_A0164 cobalamin synthesis protein/P47K family protein.
  
  
 0.718
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.647
rpmB
PFAM: ribosomal protein L28; KEGG: ribosomal protein L28; K02902 large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.616
Tter_1582
PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
  
  
 0.538
Tter_1576
PFAM: Abortive infection protein; KEGG: bcy:Bcer98_0164 abortive infection protein.
       0.532
Tter_1581
Hypothetical protein.
       0.478
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.448
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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