STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_1582PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor. (240 aa)    
Predicted Functional Partners:
mntH
Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
  
 0.859
Tter_1584
PFAM: UspA domain protein; KEGG: sfu:Sfum_0641 UspA domain protein.
       0.705
Tter_1580
PFAM: ABC-3 protein; KEGG: bcb:BCB4264_A4398 putative cation ABC transporter, permease protein.
  
  
 0.562
Tter_1578
PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.538
Tter_1579
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_1834 ABC transporter related.
  
  
 0.526
Tter_1577
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bba:Bd2444 ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.466
Tter_1581
Hypothetical protein.
       0.447
Tter_0918
KEGG: sus:Acid_0799 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
   
    0.428
Tter_0291
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; KEGG: pau:PA14_57940 RNA polymerase factor sigma-54.
   
    0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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